For users of UIMA to converse about such things as configuration and operating of the software of the Project

Joe Andrieu | 1 Jun 09:40

RE: Human annotation tool for UIMA

Thilo Goetz wrote:
> BTW, I have recently hacked UIMA's CAS Visual Debugger for a 
> colleague to allow creating manual annotations.  That was a 
> one-off, though, and I haven't fed it back into the main code 
> base.  If people are interested in that kind of 
> functionality, let me know.  We wouldn't want to compete with 
> a dedicated annotation tool, though.

I would like to second Andrew Borthwick's original request for a UIMA-savvy annotation tool. 

Adding it to a full-featured annotator would probably be great, but having an open source option would
offer the most potential
upside for UIMA. Alembic and its replacement Callisto are free, but not open source, so I believe MITRE
would have to add support
for UIMA themselves.

Are there any open source annotators people would recommend for integrating with UIMA?

-j

--
Joe Andrieu
SwitchBook Software
http://www.switchbook.com
joe@...
+1 (805) 705-8651

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J. William Murdock | 1 Jun 17:05

Re: Human annotation tool for UIMA

Joe Andrieu wrote:
> Are there any open source annotators people would recommend for integrating with UIMA?
>   

One manual annotation tool that is open source is Knowtator (which is 
licensed under MPL 1.1).  As I understand it, Knowtator is intended for 
manual annotation entities and relationships in text.  It is a layer on 
top of the Protégé open source ontology editor.  I'm not really familiar 
enough with Knowtator to explicitly recommend it.  Considering its 
stated goals and the framework that it was developed on, it seems like 
it might be particularly well suited to enabling manual annotations for 
relatively elaborate type systems that have a lot of structure and many 
common relation annotation types.  The flip side is that it may be 
overkill for the (more common) task of marking up instances of a flat 
list of named-entity types.  In any event, my point here is just that 
anyone who is thinking of building a mapping from an open source manual 
annotation tool to UIMA may want to consider Knowtator, especially if 
they are interested in a lot of expressive power.

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Julien Nioche | 1 Jun 12:00

Re: Human annotation tool for UIMA

GATE (http://gate.ac.uk) is open source and allows to create annotations manually. The interface is tightly bound to the GATE API so porting it to UIMA would be a relatively costly operation. It would certainly be easier to write a new annotation tool from scratch. However GATE could be used in the meantime to annotate documents and save them as XML, which could be loaded by UIMA at a later stage.

There is also a UIMA plugin for GATE which allows to call UIMA processes from GATE and vice versa; but I am not sure it works with the Apache version of UIMA. That could help using existing UIMA resources for pre-annotating documents.

Hope that helps

Julien

Thilo Goetz wrote:
BTW, I have recently hacked UIMA's CAS Visual Debugger for a colleague to allow creating manual annotations. That was a one-off, though, and I haven't fed it back into the main code base. If people are interested in that kind of functionality, let me know. We wouldn't want to compete with a dedicated annotation tool, though.
I would like to second Andrew Borthwick's original request for a UIMA-savvy annotation tool. Adding it to a full-featured annotator would probably be great, but having an open source option would offer the most potential upside for UIMA. Alembic and its replacement Callisto are free, but not open source, so I believe MITRE would have to add support for UIMA themselves. Are there any open source annotators people would recommend for integrating with UIMA? -j -- Joe Andrieu SwitchBook Software http://www.switchbook.com joe-WWIN1AkEjBuIuWR1G4zioA@public.gmane.org +1 (805) 705-8651

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Andrew Borthwick | 1 Jun 19:41

Re: Human annotation tool for UIMA

Thanks for your help, everyone.  I think that I will first explore using
GATE as Julien suggests below.  However, if anyone had any native UIMA tool
for doing manual annotations, it would be much appreciated.  Thilo, would
your tool work as a temporary solution?

It seems to me that having some sort of solution here would be an important
part of offering a complete UIMA toolset.  In our organization, we are
planning on working with both existing corpora and corpora which are more
specific to the domain on which we are working.  There is also the problem
of testing our NLP solution on documents of interest to us.  So there will
be many scenarios in which it won't be sufficient to simply use standard
corpora and we will need to do some annotation ourselves.

Thanks again,
Andrew Borthwick

On 6/1/07, Julien Nioche <J.Nioche@...> wrote:
>
>  GATE (http://gate.ac.uk) is open source and allows to create annotations
> manually. The interface is tightly bound to the GATE API so porting it to
> UIMA would be a relatively costly operation. It would certainly be easier to
> write a new annotation tool from scratch. However GATE could be used in the
> meantime to annotate documents and save them as XML, which could be loaded
> by UIMA at a later stage.
>
> There is also a UIMA plugin for GATE which allows to call UIMA processes
> from GATE and vice versa; but I am not sure it works with the Apache version
> of UIMA. That could help using existing UIMA resources for pre-annotating
> documents.
>
> Hope that helps
>
> Julien
>
>  Thilo Goetz wrote:
>
>  BTW, I have recently hacked UIMA's CAS Visual Debugger for a
> colleague to allow creating manual annotations.  That was a
> one-off, though, and I haven't fed it back into the main code
> base.  If people are interested in that kind of
> functionality, let me know.  We wouldn't want to compete with
> a dedicated annotation tool, though.
>
>  I would like to second Andrew Borthwick's original request for a UIMA-savvy annotation tool.
>
> Adding it to a full-featured annotator would probably be great, but having an open source option would
offer the most potential
> upside for UIMA. Alembic and its replacement Callisto are free, but not open source, so I believe MITRE
would have to add support
> for UIMA themselves.
>
> Are there any open source annotators people would recommend for integrating with UIMA?
>
> -j
>
> --
> Joe Andrieu
> SwitchBook Software
> http://www.switchbook.comjoe-WWIN1AkEjBuIuWR1G4zioA <at> public.gmane.org
> +1 (805) 705-8651
>
>
>
>
>
>

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Thilo Goetz | 1 Jun 13:33

Re: Human annotation tool for UIMA

Julien Nioche wrote:
> GATE (http://gate.ac.uk) is open source and allows to create annotations 
> manually. The interface is tightly bound to the GATE API so porting it 
> to UIMA would be a relatively costly operation. It would certainly be 
> easier to write a new annotation tool from scratch. However GATE could 
> be used in the meantime to annotate documents and save them as XML, 
> which could be loaded by UIMA at a later stage.
> 
> There is also a UIMA plugin for GATE which allows to call UIMA processes 
> from GATE and vice versa; but I am not sure it works with the Apache 
> version of UIMA. That could help using existing UIMA resources for 
> pre-annotating documents.
> 
> Hope that helps
> 
> Julien

Hi Julien,

what open source license is GATE under?  I looked at the documentation,
but couldn't find it.

--Thilo

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Julien Nioche | 1 Jun 15:00

Re: Human annotation tool for UIMA

Hi Thilo

GATE is LGPL. Besides the page I mentioned earlier, 
http://sourceforge.net/projects/gate also contains a lot of information 
about GATE (mailing lists, forums, feature requests, etc..)

J.
>
>> GATE (http://gate.ac.uk) is open source and allows to create 
>> annotations manually. The interface is tightly bound to the GATE API 
>> so porting it to UIMA would be a relatively costly operation. It 
>> would certainly be easier to write a new annotation tool from 
>> scratch. However GATE could be used in the meantime to annotate 
>> documents and save them as XML, which could be loaded by UIMA at a 
>> later stage.
>>
>> There is also a UIMA plugin for GATE which allows to call UIMA 
>> processes from GATE and vice versa; but I am not sure it works with 
>> the Apache version of UIMA. That could help using existing UIMA 
>> resources for pre-annotating documents.
>>
>> Hope that helps
>>
>> Julien
>
> Hi Julien,
>
> what open source license is GATE under?  I looked at the documentation,
> but couldn't find it.
>
> --Thilo
>
>