24 Oct 2005 19:34
BIRCH: ACEDB organizes software documentation
Brian Fristensky <frist <at> cc.umanitoba.ca>
2005-10-24 17:34:02 GMT
2005-10-24 17:34:02 GMT
Readers of this group may be interested in knowing that the BIRCH bioinformatics platform employs ACEDB as the database manager for all software documentation files, giving the user a one-stop view of all documentation for all programs. The Python program htmldoc.py automatically creates web pages from the birchdb database. Web pages organize programs by Category, Package, and also a Program Index. A tutorial with screenshots showing how local documentation is merged with core BIRCH documentation is found at http://home.cc.umanitoba.ca/~psgendb/birchadmin/addprog/localdocs.html Below is a more general description of the most recent release of BIRCH --------------------------------------------------------------- The word 'system' implies many parts working together in a coordinated fashion. While installing programs and databases can be a major effort, transforming them from a mere collection into an integrated system is far more difficult. The BIRCH system (http://home.cc.umanitoba.ca/~psgendb) makes it easy to find and use almost any program, data or document. The core distribution includes software for DNA, protein, and molecular marker data. For end users: * The GDE graphic interface [Smith et al., 1994] makes it easy to create ad hoc data pipelines using output from one program as input for another. * Locally-installed programs and databases can be added transparently,(Continue reading)
RSS Feed