14 Feb 2006 18:04
ulimit ["Error status = 139"]
Dave Matthews <matthews <at> greengenes.cit.cornell.edu>
2006-02-14 17:04:57 GMT
2006-02-14 17:04:57 GMT
Hi Jing, > I checked the ulimit on my server > (see bellow) but not sure what that means? what is the current size that > I am having? - Could you give me a hint? In bash, say "ulimit -a". On greengenes this gives me: $ ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 8192 coredump(blocks) 0 nofiles(descriptors) 64 memory(kbytes) unlimited This reminds me, a few months ago I had to reset the limit on descriptors (the number of files open at the same time) in order to load GrainGenes. User acedb's .cshrc has this: # dem 8nov05: The default 64 descriptors isn't enough for loading ACEDB now. unlimit descriptors This is because GG's database/ directory has so many files, which isn't your problem. If your problem is running out of stack space there might be a message in the system log, /var/adm/messages or wherever it is in baumwolle.(Continue reading)
RSS Feed