George Hartzell | 4 Sep 01:17
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What's up with line 248 of Bio::Coordinate::Pair?


Ok, confess.  None of you know what's up with line 248 of
Bio::Coordinate::Pair, do you?  You probably don't even know what's
*on* that line.  Wonder how many will go look.

Now that I either have your attention or have pissed you off (or
both...), I think that creating a new Bio::Location::Split object in
Bio::Coordinate::Pair::map() is a leftover or something, but I'm not
quite sure enough to excise it and commit the change.

Anyone up for it?

g.
Chris Fields | 4 Sep 03:29
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Re: What's up with line 248 of Bio::Coordinate::Pair?

Well, it doesn't look like the SplitLocation is even used, so I think  
it is safe to remove.

chris

On Sep 3, 2008, at 6:19 PM, George Hartzell wrote:

>
> Ok, confess.  None of you know what's up with line 248 of
> Bio::Coordinate::Pair, do you?  You probably don't even know what's
> *on* that line.  Wonder how many will go look.
>
> Now that I either have your attention or have pissed you off (or
> both...), I think that creating a new Bio::Location::Split object in
> Bio::Coordinate::Pair::map() is a leftover or something, but I'm not
> quite sure enough to excise it and commit the change.
>
> Anyone up for it?
>
> g.
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l <at> lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Marie-Claude Hofmann
College of Veterinary Medicine
University of Illinois Urbana-Champaign
(Continue reading)

Jason Stajich | 4 Sep 06:40

Re: What's up with line 248 of Bio::Coordinate::Pair?

Agreed - I don't know if that was something was changed mid-stream,  
but removing it should cause no pain...
-j
On Sep 3, 2008, at 6:29 PM, Chris Fields wrote:

> Well, it doesn't look like the SplitLocation is even used, so I  
> think it is safe to remove.
>
> chris
>
> On Sep 3, 2008, at 6:19 PM, George Hartzell wrote:
>
>>
>> Ok, confess.  None of you know what's up with line 248 of
>> Bio::Coordinate::Pair, do you?  You probably don't even know what's
>> *on* that line.  Wonder how many will go look.
>>
>> Now that I either have your attention or have pissed you off (or
>> both...), I think that creating a new Bio::Location::Split object in
>> Bio::Coordinate::Pair::map() is a leftover or something, but I'm not
>> quite sure enough to excise it and commit the change.
>>
>> Anyone up for it?
>>
>> g.
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l <at> lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
(Continue reading)

Heikki Lehvaslaiho | 4 Sep 08:17

Re: What's up with line 248 of Bio::Coordinate::Pair?

Quilty. So I removed the line.

George, please do not try to piss us off. You can get all the attention you 
want from us. :)

What are you planning to do to Bio::Coordinate classes?

   -Heikki

On Thursday 04 September 2008 06:40:38 Jason Stajich wrote:
> Agreed - I don't know if that was something was changed mid-stream,
> but removing it should cause no pain...
> -j
>
> On Sep 3, 2008, at 6:29 PM, Chris Fields wrote:
> > Well, it doesn't look like the SplitLocation is even used, so I
> > think it is safe to remove.
> >
> > chris
> >
> > On Sep 3, 2008, at 6:19 PM, George Hartzell wrote:
> >> Ok, confess.  None of you know what's up with line 248 of
> >> Bio::Coordinate::Pair, do you?  You probably don't even know what's
> >> *on* that line.  Wonder how many will go look.
> >>
> >> Now that I either have your attention or have pissed you off (or
> >> both...), I think that creating a new Bio::Location::Split object in
> >> Bio::Coordinate::Pair::map() is a leftover or something, but I'm not
> >> quite sure enough to excise it and commit the change.
> >>
(Continue reading)

George Hartzell | 4 Sep 18:00
Gravatar

Re: What's up with line 248 of Bio::Coordinate::Pair?

Heikki Lehvaslaiho writes:
 > Quilty. So I removed the line.
 > 
 > George, please do not try to piss us off. You can get all the attention you 
 > want from us. :)

Try not. Do... or do not. There is no try.

 > What are you planning to do to Bio::Coordinate classes?

It's a project for a paying customer (yikes...).  Pretty much exactly
what GeneMapper does, though I'll probably end up dangling a couple
more named coordinate spaces off of it.  Nothing earth shattering.
The classes look *great*.

g.

Gmane