26 Sep 00:04
BioPerl Installation Help
From: Matthew Schultz <mdschultz <at> ucdavis.edu>
Subject: BioPerl Installation Help
Newsgroups: gmane.comp.lang.perl.bio.general
Date: 2008-09-25 22:06:02 GMT
Subject: BioPerl Installation Help
Newsgroups: gmane.comp.lang.perl.bio.general
Date: 2008-09-25 22:06:02 GMT
Hi Bioperl, I've been trying to install bioperl on my Ubuntu machine I'm new to Bioperl and don't have much experience in unix so I'm at a loss for what to do next. I tried to follow the instructions on using CPAN to install Bioperl, but the installation failed. At first I thought it was because of the few warnings I received, but after trying the "force install" command without success either I'm not so sure. I was about to try the alternate option using Build.pl, but am not sure where the Bioperl installation should go (or will the Build.pl script place it in the right folder?). Any help or advice you could give would be appreciated. Thanks for your time. -Matt Schultz P.S. Here are the failed test results: Failed Test Stat Wstat Total Fail Failed List of Failed ------------------------------------------------------------------------------- t/BioFetch_DB.t 27 4 14.81% 8 20-21 27 t/DB.t 78 2 2.56% 30-31 t/EMBL_DB.t 15 3 20.00% 6 13-14 t/GuessSeqFormat.t 46 1 2.17% 11 t/InterProParser.t 2 512 47 1 2.13% 2 t/tutorial.t 2 512 21 6 28.57% 19-21 18 subtests skipped. Failed 6/179 test scripts, 96.65% okay. 14/8122 subtests failed, 99.83% okay. make: *** [test_dynamic] Error 255 /usr/bin/make test -- NOT OK Running make install(Continue reading)
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