Install ITK on mac , HDF5 problem
Dear users,
Scanning dependencies of target H5detect
/usr/bin/make -f Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/H5detect.dir/build.make Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/H5detect.dir/build
"/Applications/CMake 2.8-7.app/Contents/bin/cmake" -E cmake_progress_report /Developer/ITK/ITK-4.1/Build/Debug/CMakeFiles
[ 17%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o
cd /Developer/ITK/ITK-4.1/Build/Debug/Modules/ThirdParty/HDF5/src/itkhdf5/src && /usr/bin/gcc -DDEBUG -DH5Z_DEBUG -DH5V_DEBUG -DH5T_DEBUG -DH5S_DEBUG -DH5P_DEBUG -DH5O_DEBUG -DH5MM_DEBUG -DH5MF_DEBUG -DH5I_DEBUG -DH5HL_DEBUG -DH5HG_DEBUG -DH5G_DEBUG -DH5F_DEBUG -DH5E_DEBUG -DH5D_DEBUG -DH5B_DEBUG -DH5AC_DEBUG -Wno-uninitialized -Wno-unused-parameter -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -w -static -std=c99 -finline-functions -fno-common -fmessage-length=0 -g -I/Developer/ITK/ITK-4.1/Build/Debug/Modules/ThirdParty/ZLIB/src -I/Developer/ITK/ITK-4.1/InsightToolkit-4.1.0/Modules/ThirdParty/ZLIB/src -I/Developer/ITK/ITK-4.1/InsightToolkit-4.1.0/Modules/ThirdParty/HDF5/src -I/Developer/ITK/ITK-4.1/Build/Debug/Modules/ThirdParty/HDF5/src -I/Developer/ITK/ITK-4.1/Build/Debug/Modules/ThirdParty/HDF5/src/itkhdf5 -I/Developer/ITK/ITK-4.1/InsightToolkit-4.1.0/Modules/ThirdParty/HDF5/src/itkhdf5/src -I/Developer/ITK/ITK-4.1/InsightToolkit-4.1.0/Modules/ThirdParty/HDF5/src/itkhdf5 -I/Developer/ITK/ITK-4.1/Build/Debug -UNDEBUG -Wall -o CMakeFiles/H5detect.dir/H5detect.c.o -c /Developer/ITK/ITK-4.1/InsightToolkit-4.1.0/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5detect.c
Linking C executable ../../../../../../bin/H5detect
cd /Developer/ITK/ITK-4.1/Build/Debug/Modules/ThirdParty/HDF5/src/itkhdf5/src && "/Applications/CMake 2.8-7.app/Contents/bin/cmake" -E cmake_link_script CMakeFiles/H5detect.dir/link.txt --verbose=1
/usr/bin/gcc -Wno-uninitialized -Wno-unused-parameter -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -w -static -std=c99 -finline-functions -fno-common -fmessage-length=0 -g -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/H5detect.dir/H5detect.c.o -o ../../../../../../bin/H5detect
ld: library not found for -lcrt0.o
collect2: ld returned 1 exit status
make[2]: *** [bin/H5detect] Error 1
make[1]: *** [Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/H5detect.dir/all] Error 2
make: *** [all] Error 2
Do I need install HDF5 before installing ITK and how I can preset it ? I found directory HDF5 in ThirdParty directory and read README, but did not understand basic idea from it.
I found two variables concerning HDF5 using cmake gui :
- HDF5_BUILD_WITH_INSTALL_NAME , but I am not able to determine what is meant by 'with install name' ??
- ITK_USE_SYSTEM_HDF5 , from this variable I would conclude that ITK has some internal support for HDF5 but from the error I would say that it does not have.
Besides HDF5, I do not know how I should fill CMAKE_INSTALL_NAME_TOOL it is set to /usr/bin/install_name_tool , what it should be ?
Does anyone have tip how to solve ?
Thanks in advance, any idea would be great.
Jana
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