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David Martin | 9 Feb 15:36
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[Biopython] Proteomics tools in BioPython

We are planning to develop some proteomics tools in python and have a view to submit them as part of Biopython.
Primarily we will be writing wrappers/parsers for the OpenMS tools/output formats and analytic tools on
top of that. If anyone else is working on python wrappers for openms then I'd be happy to share expertise.

..d

Dr David Martin
College of Life Sciences
University of Dundee

The University of Dundee is a registered Scottish Charity, No: SC015096

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Peter Cock | 9 Feb 19:10
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Re: [Biopython] Proteomics tools in BioPython

On Thu, Feb 9, 2012 at 2:36 PM, David Martin <d.m.a.martin <at> dundee.ac.uk> wrote:
> We are planning to develop some proteomics tools in python and
> have a view to submit them as part of Biopython.
> Primarily we will be writing wrappers/parsers for the OpenMS
> tools/output formats and analytic tools on top of that. If anyone
> else is working on python wrappers for openms then I'd be happy
> to share expertise.
>
> ..d

Thanks David - that was quick, you must have sent this almost
straight after our chat this afternoon at the Dundee NextGenBUG
meeting :)

Peter
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Eric Talevich | 9 Feb 21:41
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Re: [Biopython] Proteomics tools in BioPython

On Thu, Feb 9, 2012 at 9:36 AM, David Martin <d.m.a.martin <at> dundee.ac.uk>wrote:

> We are planning to develop some proteomics tools in python and have a view
> to submit them as part of Biopython.
> Primarily we will be writing wrappers/parsers for the OpenMS tools/output
> formats and analytic tools on top of that. If anyone else is working on
> python wrappers for openms then I'd be happy to share expertise.
>
> ..d
>
>
Sounds great to me! Since Google Summer of Code is coming up soon, do you
see an opportunity to take on a student to help out with this work or build
something on top of it?

-Eric
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David Martin | 10 Feb 18:03
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[Biopython] Proteomics tools in biopython

There may be potential but I don't have the time to get organized for this year. We shall see how things progress.

..d

On Thu, Feb 9, 2012 at 9:36 AM, David Martin <d.m.a.martin <at> dundee.ac.uk>wrote:

> We are planning to develop some proteomics tools in python and have a
> view to submit them as part of Biopython.
> Primarily we will be writing wrappers/parsers for the OpenMS
> tools/output formats and analytic tools on top of that. If anyone else
> is working on python wrappers for openms then I'd be happy to share expertise.
>
> ..d
>
>
Sounds great to me! Since Google Summer of Code is coming up soon, do you see an opportunity to take on a
student to help out with this work or build something on top of it?

-Eric

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