ning luwen | 20 Jul 2012 05:41
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[Biopython] Fwd: Error while parsing bgk file

---------- Forwarded message ----------
From: Lenna Peterson <lennalenna <at> gmail.com>
Date: Thu, Jul 19, 2012 at 12:51 PM
Subject: Re: [Biopython] Error while parsing bgk file
To: ning luwen <bioinformaticsing <at> gmail.com>

On Wed, Jul 18, 2012 at 11:36 PM, ning luwen
<bioinformaticsing <at> gmail.com> wrote:
> Hi everyone,
>
> A error encountered when i parse a gbk file.
>
> the error message as follow:
>
> Traceback (most recent call last):
>   File "stat_refseq_gbs.py", line 10, in <module>
>     for seq in f:
>   File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/SeqIO/__init__.py",
> line 537, in parse
>     for r in i:
>   File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py",
> line 445, in parse_records
>     record = self.parse(handle, do_features)
>   File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py",
> line 428, in parse
>     if self.feed(handle, consumer, do_features):
>   File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py",
> line 400, in feed
>     self._feed_feature_table(consumer, self.parse_features(skip=False))
>   File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py",
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Gmane