20 Jul 2012 05:41
[Biopython] Fwd: Error while parsing bgk file
ning luwen <bioinformaticsing <at> gmail.com>
2012-07-20 03:41:20 GMT
2012-07-20 03:41:20 GMT
---------- Forwarded message ---------- From: Lenna Peterson <lennalenna <at> gmail.com> Date: Thu, Jul 19, 2012 at 12:51 PM Subject: Re: [Biopython] Error while parsing bgk file To: ning luwen <bioinformaticsing <at> gmail.com> On Wed, Jul 18, 2012 at 11:36 PM, ning luwen <bioinformaticsing <at> gmail.com> wrote: > Hi everyone, > > A error encountered when i parse a gbk file. > > the error message as follow: > > Traceback (most recent call last): > File "stat_refseq_gbs.py", line 10, in <module> > for seq in f: > File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/SeqIO/__init__.py", > line 537, in parse > for r in i: > File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py", > line 445, in parse_records > record = self.parse(handle, do_features) > File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py", > line 428, in parse > if self.feed(handle, consumer, do_features): > File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py", > line 400, in feed > self._feed_feature_table(consumer, self.parse_features(skip=False)) > File "/media/disk2/bio/bin/lib/python2.7/site-packages/Bio/GenBank/Scanner.py",(Continue reading)
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