3 Aug 2012 22:39
easyRNASeq install problem
Hello,
I'm trying to set up easyRNASeq on a cluster system (where I don't have root) and am getting this error:
> biocLite("easyRNASeq")
Using R version 2.11.1, biocinstall version 2.6.10.
Installing Bioconductor version 2.6 packages:
[1] "easyRNASeq"
Please wait...
Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
argument 'lib' is missing: using '/lustre/home/aloraine/R/x86_64-pc-linux-gnu-library/2.11'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package easyRNASeq is not available
I found documentation that explains that this error message "package 'something' is not available' means
that some dependencies are missing, which can happen if a package is not available for a given system.
This system is Linux, and I would think that would not be a problem here.
> sessionInfo()
R version 2.11.1 (2010-05-31)
x86_64-pc-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
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