8 Feb 20:14
21st release of BioModels Database
Dear colleagues, We are pleased to announce the twenty-first release of BioModels Database (http://www.ebi.ac.uk/biomodels/). Important changes are happening or announced in this message, so please read further. In this release, 68 new models have been published and numerous existing models have been updated. The public version of BioModels Database now contains 409 models in the curated and 420 in the non-curated branch. Together, these 829 models comprise 130800 species, 151274 relationships (which include reactions, rate rules, events and assignment rules), and 106210 cross-references. Along with the data release, we would like to announce several important changes. First of all, in addition to the SBML version of each model with annotations encoded with MIRIAM URNs, BioModels Database now provides a second SBML file with annotations encoded using Identifiers.org URLs. Those files can be accessed from the "Download SBML" menu displayed on the top left of any model page and from the models archives (now provided from the EBI FTP server). BioModels Database will serve the URN form as the default until the next release of the database. Then the URL form will be provided as the default. The files with the URN annotations will still be available for a while. We encourage software developers to consider the Identifiers.org version of MIRIAM URIs for any new development.(Continue reading)
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